PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.053890.1
Common NameCsa_3G560210, LOC101216980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 245aa    MW: 27551.3 Da    PI: 9.6415
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.053890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31161361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp+G+rF Ptd+elv++yLk+kv + +l++ ++i++vdi+ ++Pw Lp  +   +++ +fFsk+++        +r++  g+Wk+ gk+k +ls+
  Cucsa.053890.1  16 LPVGYRFCPTDQELVSHYLKRKVFHLPLPA-SIIPDVDIFLTDPWALPGDL---KEKRFFFSKQKSF------FRRSAGCGIWKSIGKEKLILSQ 100
                     799***************************.89***************544...3567899887664......6899999**************9 PP

             NAM  96 ..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++lvg +ktLvf +    ++++ t+Wvmheyrl
  Cucsa.053890.1 101 epMNQLVGFRKTLVFSESkFCERTSATRWVMHEYRL 136
                     887889**********7625677889********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3811164IPR003441NAC domain
PROSITE profilePS5100539.76216164IPR003441NAC domain
PfamPF023651.3E-2217136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNISTFVLN GGSIRLPVGY RFCPTDQELV SHYLKRKVFH LPLPASIIPD VDIFLTDPWA  60
LPGDLKEKRF FFSKQKSFFR RSAGCGIWKS IGKEKLILSQ EPMNQLVGFR KTLVFSESKF  120
CERTSATRWV MHEYRLPPSA SPTTPNSTQQ IEMGDWAVYS LFQKRRRPKR QGVEEKQRLS  180
VAKEASVLDL RVEDGWEFPQ PSSSSSSGVT EVSSNATDQE ESSSSLGLGL GFSSYFSQAH  240
VRGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-251216511169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169QKRRRPKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818571e-115LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBankLN7132601e-115LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651545.10.0PREDICTED: NAC domain-containing protein 68-like isoform X1
TrEMBLA0A0A0LDI31e-148A0A0A0LDI3_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s33260.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-31NAC domain containing protein 83
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]